Index

A

accumulate_actions() (in module psi.controller.controller_commands) accumulate_io_tree() (in module psi.controller.controller_commands) acquire() (in module psi.controller.util) action (psi.core.exceptions.ActionError attribute) ActionError activated (psi.core.enaml.dock_item.PSIDockItem attribute) add() (psi.data.plot_groups.RunningMean method) (psi.loopback.report.Checks method) add_epochs() (psi.data.plot_groups.EpochGroupAccumulator method)

add_source() (psi.data.plot_ranges.BaseDataRange method) (psi.data.plot_ranges.ChannelDataRange method) (psi.data.plot_ranges.EpochDataRange method) allow_unregistered (psi.core.experiment_action.ExperimentActionBase attribute) append_data() (psi.util.SignalBuffer method) as_numeric() (in module psi.util) ascending() (in module psi.context.choice) assert_passed() (psi.loopback.report.Checks method) associated_state (psi.core.experiment_action.ExperimentEvent attribute)

B

BACKGROUND (in module psi.launcher.icons) bad (psi.loopback.continuity.Continuity property) bad_times (psi.loopback.continuity.Continuity property)

BaseCallbackMixin (class in psi.controller.engines.callback) BaseDataRange (class in psi.data.plot_ranges) block (psi.loopback.continuity.Continuity attribute) build_parser() (in module psi.config_cli)

C

call_later() (psi.controller.dispatcher.ControlDispatcher method) callback (psi.core.experiment_action.ExperimentCallback attribute) cancel() (psi.controller.dispatcher.ControlDispatcher method) cancel_all() (psi.controller.dispatcher.ControlDispatcher method) ChannelDataRange (class in psi.data.plot_ranges) ChannelSliceCallbackMixin (class in psi.controller.engines.callback) Check (class in psi.loopback.report) check_continuity() (in module psi.loopback.continuity) check_sequence() (in module psi.context.choice) Checks (class in psi.loopback.report) chirp_power() (in module psi.controller.calibration.chirp) chirp_sens() (in module psi.controller.calibration.chirp) chirp_spl() (in module psi.controller.calibration.chirp) clear_output() (in module psi.controller.output_commands) clear_runtime() (in module psi.runtime) clear_synchronized() (in module psi.controller.output_commands) click_power() (in module psi.controller.calibration.click) click_sens() (in module psi.controller.calibration.click) click_spl() (in module psi.controller.calibration.click) closable (psi.core.enaml.dock_item.PSIDockItem attribute) collect() (in module psi.config_migrate) collect_config_py() (in module psi.config_migrate)

collect_packages() (in module psi.config_migrate) command (psi.core.experiment_action.EventLogger attribute) (psi.core.experiment_action.ExperimentAction attribute) complete() (psi.controller.engines.callback.BaseCallbackMixin method) completed (psi.loopback.runner.RunResult property) CONFIG_FILE_OVERRIDE_HELP (in module psi.config_cli) config_source() (in module psi.config) ConfigurationException container (psi.data.plot_ranges.BaseDataRange attribute) Continuity (class in psi.loopback.continuity) ControlDispatcher (class in psi.controller.dispatcher) copy_declarative() (in module psi.util) count() (psi.data.plot_groups.EpochGroupAccumulator method) counterbalanced() (in module psi.context.choice) create_config() (in module psi) (in module psi.config_cli) create_config_dirs() (in module psi.config) create_folders() (in module psi.config_cli) create_io() (in module psi.config_cli) create_io_manifest() (in module psi) current_range (psi.data.plot_ranges.BaseDataRange attribute) current_time (psi.data.plot_ranges.ChannelDataRange attribute) CyclicSequence (class in psi.loopback.continuity)

D

DAQThread (class in psi.controller.engines.thread) data_received() (psi.data.plot_ranges.BaseDataRange method) (psi.data.plot_ranges.ChannelDataRange method) (psi.data.plot_ranges.EpochDataRange method) db_ratio() (in module psi.loopback.fit) decimate_extremes() (in module psi.data.plot_util) decimate_mean() (in module psi.data.plot_util) declarative_to_dict() (in module psi.util) declarative_to_json() (in module psi.util) decrement_key() (in module psi.controller.output_commands) default() (psi.config.Setting method) (psi.util.PSIJsonEncoder method) default_legacy_folder() (in module psi.config_migrate)

delay (psi.core.experiment_action.ExperimentActionBase attribute) (psi.data.plot_ranges.BaseDataRange attribute) dependencies (psi.core.experiment_action.ExperimentActionBase attribute) descending() (in module psi.context.choice) describe() (psi.loopback.continuity.Continuity method) (psi.loopback.runner.RunResult method) describe_config_file() (in module psi.config_cli) detail (psi.loopback.report.Check attribute) device (psi.loopback.rig.Rig attribute) dict_to_declarative() (in module psi.util) disable_quick_edit() (in module psi.core.console) dock_area (psi.experiment.workspace.ExperimentWorkspace attribute) dock_layout_node_from_dict() (in module psi.experiment.dock_layout_serializer) dock_layout_node_to_dict() (in module psi.experiment.dock_layout_serializer)

E

engine_blocksize (psi.loopback.rig.Rig attribute) engine_fs (psi.loopback.rig.Rig attribute) EpochDataRange (class in psi.data.plot_ranges) EpochGroupAccumulator (class in psi.data.plot_groups) epochs (psi.loopback.fit.Fit attribute) eval_match() (in module psi.core.experiment_action) evaluate() (psi.context.expression.Expr method) event (psi.core.exceptions.ActionError attribute) (psi.core.experiment_action.ExperimentActionBase attribute) EventLogger (class in psi.core.experiment_action)

events (psi.core.experiment_action.ExperimentState attribute) exact_order() (in module psi.context.choice) ExperimentAction (class in psi.core.experiment_action) ExperimentActionBase (class in psi.core.experiment_action) ExperimentCallback (class in psi.core.experiment_action) ExperimentEvent (class in psi.core.experiment_action) ExperimentState (class in psi.core.experiment_action) ExperimentWorkspace (class in psi.experiment.workspace) Expr (class in psi.context.expression) ExpressionNamespace (class in psi.context.expression)

F

FILL (in module psi.launcher.icons) fill() (psi.loopback.continuity.CyclicSequence method) find_latency() (in module psi.loopback.fit) find_manifest_class() (in module psi.core.enaml.contribution) (psi.core.enaml.contribution.PSIContribution method) Fit (class in psi.loopback.fit) fit_stimuli() (in module psi.loopback.fit) FOREGROUND (in module psi.launcher.icons)

format_docstrings() (in module psi.context.choice) format_log_ticks() (in module psi.data.plot_util) format_time() (in module psi.data.plot_util) FRAME_WIDTH (in module psi.launcher.icons) fs (psi.loopback.continuity.Continuity attribute) (psi.loopback.fit.Fit attribute) (psi.loopback.rig.Routing attribute) Function (class in psi.context.symbol) function (psi.context.symbol.Function attribute)

G

gain (psi.loopback.continuity.Continuity attribute) (psi.loopback.rig.Route attribute) (psi.loopback.rig.Routing attribute) gain_db (psi.loopback.rig.Route property) gain_db() (in module psi.loopback.fit) generate_waveform() (in module psi.controller.token_context) get() (psi.loopback.rig.Routing method) get_all_config() (in module psi.config) get_color_cycle() (in module psi.data.plot_util) get_config() (in module psi.config) get_config_file() (in module psi.config) get_config_value() (in module psi.config_cli) get_default_filename() (in module psi.experiment.experiment_commands) get_default_layout() (in module psi.experiment.experiment_commands) get_default_path() (in module psi.experiment.experiment_commands) get_default_preferences() (in module psi.experiment.experiment_commands) get_dependencies() (in module psi.util) get_freq() (in module psi.data.plot_util) get_hw_ai_choices() (in module psi.controller.controller_commands) get_hw_ao_choices() (in module psi.controller.controller_commands) get_latest() (psi.util.SignalBuffer method) get_mean() (psi.data.plot_groups.EpochGroupAccumulator method)

get_object() (psi.context.symbol.Function method) (psi.context.symbol.ImportedSymbol method) (psi.core.preferences.ItemPreferences method) (psi.core.preferences.PluginPreferences method) (psi.core.preferences.Preferences method) get_parameters() (in module psi.controller.token_context) get_pause_text() (in module psi.controller.output_commands) get_preferences() (psi.core.preferences.Preferences method) get_range() (psi.util.SignalBuffer method) get_range_filled() (psi.util.SignalBuffer method) get_range_samples() (psi.util.SignalBuffer method) get_runtime() (in module psi.runtime) get_samples_lb() (psi.util.SignalBuffer method) get_samples_ub() (psi.util.SignalBuffer method) get_setting() (in module psi.config) get_tagged_members() (in module psi.util) get_tagged_values() (in module psi.util) get_time_lb() (psi.util.SignalBuffer method) get_time_ub() (psi.util.SignalBuffer method) get_tokens() (in module psi.controller.output_commands) get_value() (psi.context.expression.ExpressionNamespace method) get_values() (psi.context.expression.ExpressionNamespace method)

H

HANDOFF_PREFIX_OLD (in module psi.config_legacy)

hide_window() (in module psi.experiment.experiment_commands)

I

ICO_SIZES (in module psi.launcher.icons) ImportedSymbol (class in psi.context.symbol) initialize_factory() (in module psi.controller.token_context) input (psi.loopback.rig.Route attribute) input_dbfs (psi.loopback.rig.Rig attribute) input_names (psi.loopback.rig.Routing attribute) inputs (psi.loopback.rig.Rig attribute) invalidate() (psi.util.SignalBuffer method)

invalidate_samples() (psi.util.SignalBuffer method) invocations (psi.core.experiment_action.ExperimentActionBase attribute) invoke() (psi.core.experiment_action.ExperimentActionBase method) invoke_actions() (in module psi.controller.controller_commands) io_manifest (psi.loopback.rig.Rig attribute) is_dispatcher_thread() (psi.controller.dispatcher.ControlDispatcher method) item (psi.core.preferences.ItemPreferences attribute) ItemPreferences (class in psi.core.preferences)

K

keys_for_tab() (psi.data.plot_groups.EpochGroupAccumulator method)

kwargs (psi.core.experiment_action.ExperimentActionBase attribute)

L

label (psi.core.enaml.contribution.PSIContribution attribute) lag (psi.loopback.rig.Route attribute) latency (psi.loopback.fit.Fit attribute) limit (psi.loopback.report.Check attribute) list_io_templates() (in module psi.config_cli) list_preferences() (in module psi.experiment.util) load_config() (in module psi.config) load_icon() (in module psi.experiment.util) load_items() (in module psi.controller.token_context) load_layout() (in module psi.experiment.experiment_commands) load_manifest() (in module psi.core.enaml.contribution) (in module psi.loopback.autorun) (psi.core.enaml.contribution.PSIContribution method)

load_preferences() (in module psi.experiment.experiment_commands) log (psi.loopback.runner.RunResult attribute) log_actions() (in module psi.controller.controller_commands) log_commands() (in module psi.controller.controller_commands) log_events() (in module psi.controller.controller_commands) log_io() (in module psi.controller.controller_commands) log_problems() (in module psi.loopback.runner) LOG_RECORD (in module psi.loopback.runner) log_with_header() (in module psi.util)

M

main() (in module psi.config_cli) (in module psi.loopback.autorun) make_icon() (in module psi.launcher.icons) ManifestNotFoundError mark_updated() (psi.data.plot_groups.EpochGroupAccumulator method) match (psi.core.experiment_action.ExperimentActionBase attribute) max_duration (psi.data.plot_ranges.EpochDataRange attribute) max_latency (psi.loopback.rig.Rig attribute) max_samples (psi.data.plot_groups.EpochGroupAccumulator property) mean (psi.data.plot_groups.RunningMean property) measure_latency() (in module psi.loopback.rig) measure_routing() (in module psi.loopback.rig) measure_run_latency() (in module psi.loopback.rig) MERGED_INTO_SETTINGS_ROOT (in module psi.config_legacy) migrate() (in module psi.config_migrate) migrate_config() (in module psi.config_cli) migrate_name() (in module psi.config_legacy) minimize_window() (in module psi.experiment.experiment_commands) missing() (psi.loopback.rig.Routing method) module psi psi.config psi.config_cli psi.config_defaults psi.config_legacy psi.config_migrate psi.context psi.context.choice psi.context.expression psi.context.symbol psi.controller psi.controller.calibration psi.controller.calibration.chirp psi.controller.calibration.click psi.controller.calibration.tone psi.controller.controller_commands psi.controller.dispatcher psi.controller.engines psi.controller.engines.callback psi.controller.engines.thread psi.controller.output_commands psi.controller.token_context psi.controller.util psi.core psi.core.app_id psi.core.console psi.core.enaml psi.core.enaml.contribution psi.core.enaml.dock_item psi.core.exceptions psi.core.experiment_action psi.core.preferences psi.data psi.data.plot_groups psi.data.plot_ranges psi.data.plot_util psi.data.sinks psi.experiment psi.experiment.dock_layout_serializer psi.experiment.experiment_commands psi.experiment.util psi.experiment.workspace psi.launcher psi.launcher.icons psi.loopback psi.loopback.autorun psi.loopback.continuity psi.loopback.fit psi.loopback.plots psi.loopback.report psi.loopback.rig psi.loopback.runner psi.runtime psi.templates psi.templates.io psi.util psi.version

module (psi.context.symbol.ImportedSymbol attribute)

N

n_bad (psi.loopback.continuity.Continuity property) name (psi.core.enaml.contribution.PSIContribution attribute) (psi.core.experiment_action.ExperimentEvent attribute) (psi.core.experiment_action.ExperimentState attribute) (psi.core.preferences.Preferences attribute) (psi.loopback.report.Check attribute)

needs_update() (psi.data.plot_groups.EpochGroupAccumulator method) NoDefault (in module psi.config)

O

offset (psi.loopback.continuity.Continuity attribute) output (psi.loopback.rig.Route attribute) output_names (psi.loopback.rig.Routing attribute)

output_pause() (in module psi.controller.output_commands) output_resume() (in module psi.controller.output_commands) outputs (psi.loopback.rig.Rig attribute)

P

paradigm_available() (in module psi.loopback.runner) parse_setting() (in module psi.config) passed (psi.loopback.report.Check attribute) path (psi.loopback.runner.RunResult attribute) pilot_sequence() (in module psi.loopback.continuity) plot_continuity() (in module psi.loopback.plots) plot_routing() (in module psi.loopback.plots) plot_signal() (in module psi.launcher.icons) plot_timing() (in module psi.loopback.plots) plugin_id (psi.core.preferences.PluginPreferences attribute) PluginPreferences (class in psi.core.preferences) plugins_started() (psi.experiment.workspace.ExperimentWorkspace method) PNG_SIZE (in module psi.launcher.icons) Preferences (class in psi.core.preferences) prepare_decimated_curve() (in module psi.data.plot_util) prepare_output() (in module psi.controller.output_commands) prepare_output_queue() (in module psi.controller.output_commands) prepare_synchronized() (in module psi.controller.output_commands) probe_amplitude (psi.loopback.rig.Rig attribute) pseudorandom() (in module psi.context.choice) pseudorandom_sequence() (in module psi.loopback.continuity) psi module psi.config module psi.config_cli module psi.config_defaults module psi.config_legacy module psi.config_migrate module psi.context module psi.context.choice module psi.context.expression module psi.context.symbol module psi.controller module psi.controller.calibration module psi.controller.calibration.chirp module psi.controller.calibration.click module psi.controller.calibration.tone module psi.controller.controller_commands module psi.controller.dispatcher module psi.controller.engines module psi.controller.engines.callback module psi.controller.engines.thread module psi.controller.output_commands module psi.controller.token_context module psi.controller.util module psi.core module psi.core.app_id module

psi.core.console module psi.core.enaml module psi.core.enaml.contribution module psi.core.enaml.dock_item module psi.core.exceptions module psi.core.experiment_action module psi.core.preferences module psi.data module psi.data.plot_groups module psi.data.plot_ranges module psi.data.plot_util module psi.data.sinks module psi.experiment module psi.experiment.dock_layout_serializer module psi.experiment.experiment_commands module psi.experiment.util module psi.experiment.workspace module psi.launcher module psi.launcher.icons module psi.loopback module psi.loopback.autorun module psi.loopback.continuity module psi.loopback.fit module psi.loopback.plots module psi.loopback.report module psi.loopback.rig module psi.loopback.runner module psi.runtime module psi.templates module psi.templates.io module psi.util module psi.version module psi_json_decoder_hook() (in module psi.util) PSIContribution (class in psi.core.enaml.contribution) PSIDockItem (class in psi.core.enaml.dock_item) PSIException PSIJsonEncoder (class in psi.util)

R

reconstructed (psi.loopback.fit.Fit attribute) recorded (psi.loopback.fit.Fit attribute) reference() (psi.loopback.continuity.CyclicSequence method) register_ai_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) register_ao_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) register_ci_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) register_defaults() (in module psi.config) register_di_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) register_done_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) registered (psi.core.enaml.contribution.PSIContribution attribute) reload_config() (in module psi.config) REMOVED (in module psi.config_legacy) RENAMED (in module psi.config_legacy) reset() (psi.context.expression.ExpressionNamespace method) (psi.data.plot_groups.EpochGroupAccumulator method)

residual_db (psi.loopback.continuity.Continuity attribute) resize() (psi.util.SignalBuffer method) resolve_source() (in module psi.config_migrate) returncode (psi.loopback.runner.RunResult attribute) Rig (class in psi.loopback.rig) Route (class in psi.loopback.rig) route_threshold (psi.loopback.rig.Rig attribute) routes (psi.loopback.rig.Routing attribute) Routing (class in psi.loopback.rig) rpc() (in module psi.util) run() (psi.controller.engines.thread.DAQThread method) run_paradigm() (in module psi.loopback.runner) RunningMean (class in psi.data.plot_groups) RunResult (class in psi.loopback.runner) RUNTIME_ONLY (in module psi.config_legacy)

S

samples (psi.loopback.continuity.Slip attribute) samples_to_index() (psi.util.SignalBuffer method) save() (in module psi.loopback.plots) save_config() (in module psi.config) save_layout() (in module psi.experiment.experiment_commands) save_preferences() (in module psi.experiment.experiment_commands) set_app_id() (in module psi.core.app_id) set_application_icon() (in module psi.experiment.util) set_config_value() (in module psi.config_cli) set_default_layout() (in module psi.experiment.experiment_commands) set_default_preferences() (in module psi.experiment.experiment_commands) set_dock_style() (in module psi.experiment.experiment_commands) set_preferences() (psi.core.preferences.Preferences method) set_runtime() (in module psi.runtime) set_token() (in module psi.controller.output_commands) set_value() (psi.context.expression.ExpressionNamespace method) set_values() (psi.context.expression.ExpressionNamespace method) Setting (class in psi.config) setting_names() (in module psi.config) setting_type() (in module psi.config) SETTING_TYPES (in module psi.config)

settings_root_from_pair() (in module psi.config_legacy) setup_windows_console() (in module psi.core.console) show_config() (in module psi.config_cli) show_window() (in module psi.experiment.experiment_commands) shuffled_set() (in module psi.context.choice) SignalBuffer (class in psi.util) simple_match() (in module psi.core.experiment_action) Slip (class in psi.loopback.continuity) slips (psi.loopback.continuity.Continuity attribute) sources() (psi.loopback.rig.Routing method) span (psi.data.plot_ranges.BaseDataRange attribute) start() (psi.experiment.workspace.ExperimentWorkspace method) start_experiment() (in module psi.controller.controller_commands) start_output() (in module psi.controller.output_commands) start_synchronized() (in module psi.controller.output_commands) stop() (psi.controller.dispatcher.ControlDispatcher method) stop_experiment() (in module psi.controller.controller_commands) submit() (psi.controller.dispatcher.ControlDispatcher method) submit_sync() (psi.controller.dispatcher.ControlDispatcher method) subscribe_to_queue() (in module psi.controller.output_commands) Symbol (class in psi.context.symbol)

T

tab_needs_update() (psi.data.plot_groups.EpochGroupAccumulator method) threshold (psi.loopback.rig.Routing attribute) threshold_db (psi.loopback.continuity.Continuity attribute) time (psi.loopback.continuity.Slip attribute) time_to_index() (psi.util.SignalBuffer method) time_to_samples() (psi.util.SignalBuffer method) times (psi.loopback.continuity.Continuity attribute) toggle() (in module psi.controller.output_commands)

toggle_off() (in module psi.controller.output_commands) toggle_on() (in module psi.controller.output_commands) tone_power() (in module psi.controller.calibration.tone) tone_sens() (in module psi.controller.calibration.tone) tone_spl() (in module psi.controller.calibration.tone) TRACE_WIDTH (in module psi.launcher.icons) track_sources (psi.data.plot_ranges.ChannelDataRange attribute) transform (psi.data.plot_groups.EpochGroupAccumulator attribute)

U

unexplained_db (psi.loopback.fit.Fit property) unregister_ai_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) unregister_ao_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) unregister_di_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method)

unregister_done_callback() (psi.controller.engines.callback.ChannelSliceCallbackMixin method) update_dock_style() (in module psi.experiment.experiment_commands) update_expressions() (psi.context.expression.ExpressionNamespace method) update_symbols() (psi.context.expression.ExpressionNamespace method)

V

valid_name() (psi.core.enaml.contribution.PSIContribution class method)

value (psi.loopback.report.Check attribute)

W

weight (psi.core.experiment_action.ExperimentActionBase attribute) workspace_layout_from_dict() (in module psi.experiment.dock_layout_serializer) workspace_layout_to_dict() (in module psi.experiment.dock_layout_serializer) worst_db (psi.loopback.continuity.Continuity property)

wrap_text() (in module psi.util) wrapup (psi.loopback.runner.RunResult attribute) write_index() (in module psi.loopback.report) write_metadata() (in module psi.experiment.experiment_commands) write_report() (in module psi.loopback.report)